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Service description
Service name:
*
Tagline:
Description:
Category:
Experimental Workflows Design & Implementation
Data Processing & Analysis
Data Visualisation & Predictive Toxicity
Data Storage & Online Accessibility
Service type:
Electronic Laboratory Notebook (ELN)
Image analysis tool
Protocols and methods repository
Experimental workflow
Data curation tool
Semantic annotation tool
Modelling tool
Data warehouse
Knowledge base
Implementation status:
Graphical user interface (GUI) available
Containerised
Application programming interface (API) available
Available as web service
Technology readiness level:
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TRL 1 – basic principles observed
TRL 2 – technology concept formulated
TRL 3 – experimental proof of concept
TRL 4 – technology validated in lab
TRL 5 – technology validated in relevant environment (industrially relevant environment in the case of key enabling technologies)
TRL 6 – technology demonstrated in relevant environment (industrially relevant environment in the case of key enabling technologies)
TRL 7 – system prototype demonstration in operational environment
TRL 8 – system complete and qualified
TRL 9 – actual system proven in operational environment (competitive manufacturing in the case of key enabling technologies; or in space)
Applicability domain:
Hazard assessment
Risk assessment
Risk characterisation
Bioinformatics
Exposure assessment
Ontologies
Nanoinformatics
Advanced materials
Safe by design
Topic:
Read-across
(Quantitative) structure-activity relationship (SAR / QSAR)
Protein and small molecule corona analysis
Information extraction
Identifier mapping
Kinetics / biokinetics
Predictive modelling
Omics data analysis
Physicochemical characterisation of nanomaterials
Toxicology
Ecotoxicology
Computational descriptors for nanomaterials
Structural modelling
Crystallography
Targeted industry:
Cosmetics
Drugs
Nanotechnology
Chemicals
Other consumer products
Food and feed
Textiles
Constructions
Automotives
Targeted users:
General public
Regulators
Data managers
Software developers
Researchers
Students
Risk assessors
Policy makers
Data modellers
Access type:
Physical
Remote
Licence type:
---------
Open source
Proprietary software
Licence:
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GNU Lesser General Public License (LGPL) 2 (LGPLv2.0)
Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)
Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)
Attribution-NoDerivatives 4.0 International (CC BY-ND 4.0)
Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)
Attribution 4.0 International (CC BY 4.0)
Attribution-ShareAlike 4.0 International (CC BY-SA 4.0)
GNU Lesser General Public License 3 (LGPLv3.0)
Elsevier user license - (Elsevier)
Apache 2.0 (Apache)
Is login required?
Service location
Service URL:
Service API URL:
API Type:
SPARQL
OpenAPI
REST
REST under OpenAPI2 specification
SOAP
Provider
Organisation:
*
Name:
Contact details:
NanoCommons member?
Documentation and support
Link to user support service:
User support contact:
Link to documentation:
References:
NanoCommons Library resources:
Interactive "Collaborative Research" Workshop / SbD Workshop
Interactive "Collaborative Research" Workshop / SbD Workshop
Online SPARQL Access to WikiPathway and AOP-Wiki Webinar
EU Nanosafety Cluster Training Day @ NanoSAFE 2020 Digital Conference - the recordings
EU NanoSafety Cluster Education Day @ NanoSafe 2020 Digital Conference - the recordings
Poster presentation: Expanding the eNanoMapper Ontology - ICBO2020
Working Towards a Harmonized Nanosafety E-Infrastructure for Data and In Silico Tools
Online ELN basics Hackathon - training materials
Jaqpot Hackathon - Training materials
FAIR starts with findable: data sets and nanomaterials
Spreadsheets in nanosafety research
Workshop: Annotating Your Experimental Data
When Would Immunologists Consider a Nanomaterial to be Safe? Recommendations for Planning Studies on Nanosafety
Zeta‐Potential Read‐Across Model Utilizing Nanodescriptors Extracted via the NanoXtract Image Analysis Tool Available on the Enalos Nanoinformatics Cloud Platform
What does the NanoCommons e-infrastructure offer for the Governance of nano- and advanced materials?
Enalos Cloud Platform Transnational Access Services Through NanoCommons H2020 Infrastructure Project
Online training tools for nanosafety assessment – NanoCommons for researchers and safety assessors in industry, academia and regulatory authorities
The NanoCommons e-infrastructure – A quick guide to what and how of nanoinformatics in safety assessment suiting basic to expert users in academia, industry, and regulatory agencies
The rise of the nanomaterial metabolite corona, and emergence of the complete corona
Extensive rewiring of the EGFR network in colorectal cancer cells expressing transforming levels of KRASG13D
Jaqpot 5 Tutorial : How to access and use an existing predictive model
Jaqpot 5 Tutorial: How to simulate biodistribution scenarios using custom PBPK models
Jaqpot 5 Tutorial : User accounts
Jaqpot 5 Tutorial: How to manage and use organisations
Jaqpot 5 Tutorial: How to deploy a predictive model using the jaqpotpy library
D10.2 - Interactions Needs and Goals of Nano Safety Projects and Programs
D5.3. - First raw data processing and knowledge extraction tools integrated into KB and first theoretical descriptor calculation services available
D5.4 - First predictive nanoQSAR models integrated into NanoCommons KnowledgeBase
D5.5 - A workflow and checklist of key information needed from modelling tool owners to facilitate integration into KB
D6.1 - A workflow and checklist for experimental design and informatics workflow for risk assessment for use in WP9
D10.3 - Initial version of NanoCommons Sustainability Plan
D2.1 - 1st Annual conference and nano-exploitation day, stakeholder workshop and User call
D2.2 - 1st set of Stakeholder Workshops and Report on Stakeholder feedback on the usability of NanoCommons portal and tools
D4.3 - Initial NanoCommons Ontology
D4.4 - First version of data warehouse and collaborative knowledge infrastructure
D5.1 - Initial Knowledge Infrastructure Functionalities and Services Implemented
D5.2 - First big data (omics) analysis and mining tools integrated into KnowledgeBase
Deliverable Report 1.2 – Dissemination Strategy
Semantic Interoperability and Characterization of Data Provenance in Computational Molecular Engineering
NanoCommons - How can we help you?
ACEnano knowledge infrastructure to support data collection, methods optimisation and knowledge sharing in the area of physicochemical characterisation of nanomaterials
Introduction to biocorona in silico modeling around nanoparticles
Introduction to data /metadata management in nanosafety assessment workflows
ACEnano knowledge infrastructure data management training
The NanoCommons knowledge infrastructure built to support the research communities, industrial users and regulators in the area of nanomaterials safety assessment
ACEnano knowledge infrastructure
TAs @ NanoCommons
NanoCommons TA - UoB: Data management in nanosafety research. From bench to database thus streamlining analysis and publication
NanoCommons - Opportunities for accessing nanoinformatics and predictive models for environmental fate.
PBPK modelling on the Jaqpot web platform - a PAA-peg nanoparticles case study
ACEnano Knowledge Infrastructure publicly available to the scientific community
OpenRiskNet webinar recordings
Introduction webinar to Guidenano risk assessment tool
Tutorial for Enalos NanoXtract tool for TEM image analysis
Introductory video on Nanoinformatics Model for Zeta Potential Prediction Powered by Enalos Cloud Platform
Video clip on Guidenano tool: first insight of the tool
Tutorial for Nanoinformatics Model for Zeta Potential Prediction Powered by Enalos Cloud Platform
Webinar recording of Enalos NanoXtract TEM image analysis tool
Video on Enalos Nanoinformatics Cloud Platform: A Safe-by-Design Tool for Functionalized Nanomaterials
Tutorial for Enalos Nanoinformatics Cloud Platform: A Safe-by-Design Tool for Functionalized Nanomaterials
Webinar recording: Introduction to Scinote online notebooks
Scinote online notebooks
ACEnano knowledge infrastructure manual
NanoFASE Data Curation Manual - Manual and a Visual Guide to Curating Data
Read-across predictions of nanoparticle hazard endpoints: a mathematical optimization approach
An Integrative Computational Approach for a Prioritization of Key Transcription Regulators Associated With Nanomaterial-Induced Toxicity
ACEnano Knowledge Infrastructure version 2.0
Data management in nanomaterials research: Hands on session
Mapping connections in signaling networks with ambiguous modularity
Nanoinformatics Model for Zeta Potential Prediction Powered by Enalos Cloud Platform
Driving the nanoinformatics wave
Nanoinformatics Model for Zeta Potential Prediction Powered by Enalos Cloud Platform
Modeling cell line-specific recruitment of signaling proteins to the insulin-like growth factor 1 receptor
Release of ACEnano Knowledge Warehouse: Data collection, methods optimisation and knowledge sharing
A safe-by-design tool for functionalised nanomaterials through the Enalos Nanoinformatics Cloud platform
Learn how to create and use a biokinetics model using Jaqpot 4
Learn how to create and use a predictive model using Jaqpot 4
Using the NanoCommons Knowledge portal for templates and annotation upload
Introduction to the eNanoMapper ontology
Using the NanoCommons Knowledge portal for templates and annotation upload
Introduction to the eNanoMapper Ontology
Dissecting RAF Inhibitor Resistance by Structure-based Modeling Reveals Ways to Overcome Oncogenic RAS Signaling
Video on Modelling Nanomaterial Toxicity with JaqPot 4
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