Events

1st NanoCommons Hackathon on “Ontological Annotation of Datasets”

Hackathon (co-organized by NanoCommons)
9 Oct 2018 / Athens, GR

Activity details

The 1st NanoCommons Hackathon on “Ontological Annotation of Datasets” was co-organised by H2020 projects NanoCommons and OpenRiskNet. The hackathon took place during the afternoon on 9 October 2018 in conjunction with the next NanoCommons Consortium Meeting (8-9 October 2018) and the OpenTox Euro Conference (8-11 October 2018) in Athens, Greece. The participants worked using their own or mock datasets and search through established ontologies (e.g. eNanoMapper Ontology) for ontological annotations. The participants also learn how to prepare electronic files (e.g. JSON) containing the raw data and the ontological metadata.

Organisations involved

The University of Birmingham (UoB)
Edelweiss Connect GmbH (EwC)
National Technical University of Athens (NTUA)
BIOMAX Informatics AG (BIOMAX)
Universiteit Maastricht (UM)

Resources & Training materials

Presentation
Introduction to the eNanoMapper ontology
Luke Slater, University of Birmingham
9 Oct 2018
Abstract:

Presentation on the structure, content and usage of the eNanoMapper ontology.

Additional materials:
Presentation on the structure, content and usage of the eNanoMapper ontology.
Target audience: Data providers, Software developers, Bioinformaticians, Data modellers, Regulators, General public, Data owners, Data managers, Students, Researchers, Risk assessors
Open access: yes
Licence: Attribution 4.0 International (CC BY 4.0)
Organisations involved: UoB
Presentation
Presentation
Using the NanoCommons Knowledge portal for templates and annotation upload
Beatrix Gerhard Ivan Stambolic Dieter Meier
9 Oct 2018
Abstract:

Presentation on the use of the NanoCommons Knowledge portal for templates and annotation upload. Presented during the 1st NanoCommons Hackathon on the Ontological annotation of datasets.

Additional materials:
NanoCommons_Hackathon_Knowledge-portal.pdf
Target audience: Data providers, Bioinformaticians, Data modellers, Regulators, Data owners, Data managers, Students, Researchers, Risk assessors
Open access: yes
Licence: Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)
Organisations involved: BIOMAX
Presentation
Video
Introduction to the eNanoMapper Ontology
Luke Slater
9 Oct 2018
→ https://www.youtube.com/watch?v=rVIc_fr5R1Y&feature=youtu.be
Abstract:

Presentation on the eNanoMapper ontology, its structure and use for annotating nanosafety and nanotechnology data. The presentation took place during the 1st NanoCommons hackathon on the ontological annotation of datasets, Athens, Greece, Oct 2018.

Target audience: Data providers, Bioinformaticians, Data modellers, Data owners, Data managers, Researchers
Open access: yes
Licence: Attribution 4.0 International (CC BY 4.0)
Organisations involved: UoB
Video
Video
Using the NanoCommons Knowledge portal for templates and annotation upload
Beatrix Gerhard Ivan Stambolic Deiter Meier
9 Oct 2018
→ https://youtu.be/oRhVsAFiZbI
Abstract:

Presentation on the use of the NanoCommons Knowledge portal for templates and annotation upload. Presented during the 1st NanoCommons Hackathon on the Ontological annotation of datasets.

Target audience: Data providers, Bioinformaticians, Data modellers, Data owners, Data managers, Students, Researchers, Risk assessors
Open access: yes
Licence: Attribution 4.0 International (CC BY 4.0)
Organisations involved: BIOMAX
Video

Links and additional materials

Website:
https://www.nanocommons.eu/1st-nanocommons-hackathon-ontological-annotations-of-datasets/

Audience reached

Mixed audience (scientists, regulatory, industry, developers, etc.): 20
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